0.6406990000000000185
AT5G09490.1
<html><body><title>AT5G09490.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520949001000i/AT5G09490.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520949001000i/AT5G09490.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520949001000i/AT5G09490.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321596001000i">AT3G15960.1</a></td><td>0.984536</td><td>ATP binding / mismatched DNA binding</td><td>OMAT3P105380</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322428001000i">AT3G24280.1</a></td><td>0.981883</td><td>SMAP2 (small acidic protein 2)</td><td>OMAT3P108030</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421396801000i">AT4G13968.1</a></td><td>0.980033</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123092001000i">AT1G30920.1</a></td><td>0.978339</td><td>F-box family protein</td><td>OMAT1P109760</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520850501000i">AT5G08505.1</a></td><td>0.977954</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223176001000i">AT2G31760.1</a></td><td>0.977341</td><td>zinc finger protein-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322771001000i">AT3G27710.1</a></td><td>0.977221</td><td>zinc finger protein-related</td><td>OMAT3P010400</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126685501000i">AT1G66855.1</a></td><td>0.976897</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220393101000i">AT2G03931.1</a></td><td>0.973953</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523747301000i">AT5G37473.1</a></td><td>0.973892</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520121501000i">AT5G01215.1</a></td><td>-0.652909</td><td>other RNA</td><td>-</td><td>-</td><td>OMAT5P000060</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120102001000i">AT1G01020.1</a></td><td>-0.644187</td><td>ARV1</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221202501000i">AT2G12025.1</a></td><td>-0.6271</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321327001000i">AT3G13270.1</a></td><td>-0.624048</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422648801000i">AT4G26488.1</a></td><td>-0.611564</td><td>other RNA</td><td>-</td><td>-</td><td>OMAT4P008390</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120986001000i">AT1G09860.1</a></td><td>-0.60051</td><td>ATPUP16</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420835101000i">AT4G08351.1</a></td><td>-0.594606</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123003001000i">AT1G30030.1</a></td><td>-0.592644</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122231002000i">AT1G22310.2</a></td><td>-0.566993</td><td>MBD8</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221428501000i">AT2G14285.1</a></td><td>-0.557097</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u520949001000i/AT5G09490.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>112/200</td><td>4.61</td><td>2.80e-51</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>139/200</td><td>1.52</td><td>3.12e-12</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004857</td><td>enzyme inhibitor activity</td><td>10/200</td><td>9.56</td><td>9.67e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>11/200</td><td>5.49</td><td>9.50e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>13/200</td><td>2.19</td><td>2.76e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>112/200</td><td>4.74</td><td>1.68e-52</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>112/200</td><td>4.62</td><td>2.12e-51</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defensin</td><td>-</td><td>31/200</td><td>23.86</td><td>4.37e-35</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>secreted</td><td>-</td><td>17/200</td><td>25.24</td><td>8.41e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>72/200</td><td>2.82</td><td>9.28e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>weight</td><td>-</td><td>14/200</td><td>20.78</td><td>2.70e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cysteine</td><td>-</td><td>19/200</td><td>8.63</td><td>1.08e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>17/200</td><td>7.07</td><td>4.81e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>small</td><td>-</td><td>21/200</td><td>5.21</td><td>1.39e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>11/200</td><td>11.72</td><td>2.12e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr006501</td><td>-</td><td>10/200</td><td>13.52</td><td>2.42e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>20/200</td><td>5.26</td><td>3.01e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular</td><td>-</td><td>15/200</td><td>7.09</td><td>5.14e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>16/200</td><td>5.35</td><td>1.05e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>modification</td><td>-</td><td>10/200</td><td>5.88</td><td>1.31e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>24/200</td><td>2.69</td><td>3.52e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>globular</td><td>-</td><td>13/200</td><td>3.46</td><td>2.81e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>12/200</td><td>3.56</td><td>3.92e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>24/200</td><td>2.19</td><td>1.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>13/200</td><td>3.05</td><td>1.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>10/200</td><td>2.91</td><td>7.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ligase</td><td>-</td><td>10/200</td><td>2.56</td><td>2.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>10/200</td><td>2.46</td><td>2.77e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>76/200</td><td>1.27</td><td>5.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ubiquitin</td><td>-</td><td>10/200</td><td>2.23</td><td>5.81e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>14/200</td><td>1.92</td><td>6.85e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>10/200</td><td>2.14</td><td>7.70e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
without_OMAT_gene